Publications

• FactorPath^tm Discovery and FactorPath Query: Brynczka et al, BMC Genomics (2007), 8:139-55.
• FactorPath Discovery: Labhart et al, PNAS (2005), 102, 1339-1344.
• Agoulnik IU et al, Cancer Res (2006), Nov 1; 66(21):10594-10602.
• Alexiadis V et al, Biochim Biophys Acta (2007), Jan; 1769(1):29-40.
• Ferguson GD et al, J Clin Immunol (2007), Mar; 27(2):210-220.
• Saban R et al, BMC Physiol (2007), Mar 30; 7(1):3.
• Saban MR et al, BMC Immunol (2007), May 16; 8:6.
• Saban R et al, BMC Immunol (2007), Aug 17; 8:17
• de Parseval et al, J. Clin. Invest. (2007) doi:10.1172/JCI32322
• Staybrook KR et al, Mol Pharmacol (2008) 73:607-612
• Saban MR et al, BMC Immunology (2008), 9:4doi:10.1186/1471-2172-9-4

Product Literature

• Genpathway ChIP Assay Services Overview
• FactorPath: Following the genetic pathway
• TranscriptionPath^tm: Gene expression profiling
• Q & A with Mary Warren, CSO/COO of Genpathway

Application Notes

Application Notes are a series of short publications demonstrating the uses of Genpathway technologies and the results of actual experiments.

• ChIP Sequencing: Illumina Sequencing Services with Genpathway ChIP Assay and Data Analysis Services
• Methylated DNA IP-on-Chip/Tiling: Comprehensive discovery of methylated DNA regions across whole-genome tiling arrays.
• FactorPath ChIP-on-Chip/Tiling: Comprehensive discovery of transcription factor binding sites across whole genome tiling arrays.
• FactorPath ChIP-on-Chip/Promoter: Comprehensive discovery of factor binding sites in promoter regions.
• TranscriptionPath ChIP-on-Chip/Tiling: Comprehensive discovery of transcribed genes across whole-genome tiling arrays.
• TranscriptionPath QueryMode: Quantitation of Transcription and Comparison to RNA Levels.
• TranscriptionPath QueryMode: Timecourse of Expression.
• FactorPath QueryMode: Identification and Quantitation of Transcription Factor Binding.
• TranscriptionPath QueryMode: Tissue Testing and Toxicology.
• Stable TranscriptionPath Levels: Testing of Postmortem Samples.
• Toxicity Testing by TranscriptionPath: Comparison with RNA.

Affymetrix GeneChip^® Software Tools

Below are links to Affymetrix GeneChip Software Tools that can be used for analyzing certain Genpathway ChIP-on-Chip and DNA IP-on-Chip assay results.

• Integrated Genome Browser (IGB)
• Tiling Analysis Software (TAS)