Published Research
A growing community of researchers is using Genpathway products and services
for a range of applications. If you know of other published research involving
Genpathway products, we’d be pleased to include them on our website.
Please send citations to: info@genpathway.com.
FactorPath | ChIP-on-Chip
Tummala P, Mali RS, Guzman E, Zhang X, Mitton KP (2010). Temporal ChIP-on-Chip of RNA-Polymerase-II to detect novel gene activation events during photoreceptor maturation. Mol Vis 16:252-271. http://www.molvis.org/molvis/v16/a32
[ PDF ]
Stayrook KR, Rogers PM, Savkur RS, Wang Y, Su C, Varga G, Bu X, ei T, Nagpal S, Liu XS, Burris TP (2008). Regulation of human 3α-hydroxysteroid dehydrogenase (AKR1C4) expression by the liver X receptor α. Mol Pharm 73:607-612.
http://molpharm.aspetjournals.org/cgi/content/abstract/73/2/607
[ PDF ]
MethylPath MeDNA IP-on-Chip
Morahan JM, YU B, Trent RJ, Pamphlett R (2008). A genome-wide analysis of brain DNA methylation identifies new candidate genes for sporadic amyotrophic lateral sclerosis. Informa healthcare 1-16, iFirst article
http://www.informaworld.com/smpp/content~content=a907381929~db=all~order=pubdate
[ PDF ]
FactorPath | ChIP-Seq
Stahl HF, Fauti T, Ullrich N, Bopp T, Kubach J, et al. (2009). miR-155 Inhibition Sensitizes CD4+ Th Cells for TREG Mediated Suppression. PLoS ONE 4(9): e7158. doi:10.1371/journal.pone.0007158
[ PDF ]
Hariparsad N, Chu X, Yabut J, Labhart P, Hartley DP, Dai X, Evers R (2009). Identification of pregnane-X receptor target genes and coactivator and corepressor binding to promoter elements in human hepatocytes. NAR, 1–14.
http://nar.oxfordjournals.org/cgi/content/full/gkn1047v1
[ PDF ]
Rosenbluth JM, Mays DJ, Pino MF, Tang LJ, Pietenpol JA (2008). A gene signature-based approach Identifies mTOR as a regulator of p73. Mol Cell Biol 28(19): 5951-5964.
http://mcb.asm.org/cgi/content/full/28/19/5951?view=long&pmid=18678646
[ PDF ]
Brynczka C, Labhart P, Merrick BA (2007). NGF-mediated transcriptional targets of p53 in PC12 neuronal differentiation. BMC Genomics 8:139.
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=17540029
[ PDF ]
Agoulnik IU, Vaid A, Nakka M, Alvarado M, Bingman WE, Erdem H, Frolov A, Smith CL, Ayala GE, Ittman MM, Weigel NL (2006). Androgens modulate expression of transcription intermediary factor 2, an androgen receptor coactivator whose expression level correlates with early biochemical recurrence in prostate cancer. Cancer Res 66(21): 10594-10602.
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17079484
[ PDF ]
Labhart P, Karmakar S, Salicru EM, Egan BS, Alexiadis V, O’Malley BW, Smith CL (2005). Identification of target genes in breast cancer cells directly regulated by SRC-3/AIB1 coactivator. Proc Natl Acad Sci USA 102(5): 1339-1334.
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=15677324
[ PDF ]
FactorPath | Query-qPCR
Chisamore MJ, Cunningham ME, Flores O, Wilkinson HA, Chen JD (2009). Characterization of a Novel Small Molecule Subtype Specific Estrogen-Related Receptor a Antagonist in MCF-7 Breast Cancer Cells. PLoS ONE 4(5): e5624. doi:10.1371/journal.pone.0005624
[ PDF ]
Li H, Ray G, Yoo BH, Erdogan M, Rosen KV (2009). Down-regulation of death-associated protein kinase-2 Is required for β-catenin-induced anoikis resistance of malignant epithelial cells.
J. Biol. Chem 284(4): 2012-2022.
http://www.jbc.org/cgi/content/full/284/4/2012
[ PDF ]
Krueger KC, Deneris ES (2008). Serotonergic transcription of human FEV reveals direct GATA factor interactions and fate of Pet-1 deficient serotonin neuron precursors. J Neurosci. 28(48): 12748–12758.
http://www.jneurosci.org/cgi/content/full/28/48/12748
Krueger J Neurosci Nov08.pdf
[ PDF ]
Saban R, Simpson C, Davis C, Dozmorov I, Maier J, Fowler B, Ihnat M, Hurst R, Wershil B, Saban M (2007). Transcription factor network downstream of protease activated receptors (PARs) modulating mouse bladder inflammation. BCM Immunol 8:17.
http://www.biomedcentral.com/1471-2172/8/17
[ PDF ]
TranscriptionPath | Query-qPCR
Alexiadis V, Ballestas ME, Sanchez C, Winokur S, Vedanarayanan V, Warren M, Ehrlich M (2007). RNAPol-ChIP analysis of transcription from FSHD-linked tandem repeats and satellite DNA. Biochim Biophys Acta 1769(1): 29-40.
http://dx.doi.org/10.1016/j.bbaexp.2006.11.006
[ PDF ]
Ferguson GD, Jensen-Pergakes K, Wilkey C, Jhaveri U, Richard N, Verhelle D, De Parseval LM, Corral LG, Xie W, Morris CL, Brady H, Chan K (2007). Immunomodulatory drug CC-4047 is a cell-type and stimulus-selective transcriptional inhibitor of cyclooxygenase 2. J Clin Immunol 27(2): 210-220.
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17308870
[ PDF ]
Saban R, D’Andrea MR, Andrade-Gordon P, Derian CK, Dozmorov I, Ihnat MA, Hurst RE, Simpson C, Saban MR (2007). Regulatory network of inflammation downstream of proteinase-activated receptors. BMC Physiol 7(1): 3.
http://www.biomedcentral.com/1472-6793/7/3/abstract
[ PDF ]
Saban MR, Simpson C, Davis C, Wallis G, Knowlton N, Frank MB, Centola M, Gallucci RM, Saban R (2007). Discriminators of mouse bladder response to intravesical Bacillus Calmette-Guerin (BCG). BMC Immunol 8:6.
http://www.biomedcentral.com/1471-2172/8/6
[ PDF ]
Saban MR, O’Donnell MA, Hurst RE, Wu X, Simpson C, Dozmorov I, Davis CA, Saban R (2008). Molecular networks discriminating mouse bladder responses to intravesical bacillus Calmette-Guerin (BCG), LPS, and TNF-alpha. BCM Immunol 9:4.
http://www.biomedcentral.com/1471-2172/9/4
[ PDF ]
Saban MR, Hellmich HL, Simpson C, Davis CA, Lang ML, Ihnat MA, O'Donnell MA, Wu X-R, Saban R (2007). Repeated BCG treatment of mouse bladder selectively stimulates small GTPases and HLA antigens and inhibits single-spanning uroplakins. BMC Cancer 7(204).
http://www.biomedcentral.com/1471-2407/7/204
[ PDF ]
Saban MR, Backer JM, Backer MV, Maier J, Fowler B, Davis CA, Simpson C, Xue-Ru Wu, Birder L, Freeman MR, Soker S, Hurst RE, Saban R (2007) VEGF receptors and neuropilins are expressed in the urothelial and neuronal cells in normal mouse urinary bladder and are upregulated in inflammation. Am J Physiol Renal Physiol 295: F60 –F72.
http://ajprenal.physiology.org/cgi/content/full/295/1/F60
[ PDF ]
FactorPath & TranscriptionPath | Query-qPCR
Mali RS, Peng GH, Zhang X, Dang L, Chen S, Mitton KP (2008). FIZ1 is part of the regulatory protein complex on active photoreceptor-specific gene promoters in vivo. BMC Mol, 9(87): 1471-2199.
http://www.biomedcentral.com/1471-2199/9/87
[ PDF ]
HistonePath & TranscriptionPath | Query-qPCR
deParseval LM, Verhelle D, Glezer E, Jensen-Pergakes K, Ferguson GD, Corral LG, Morris CL, Muller G, Brady H, Chan K (2008). Pomalidomide and lenalidomide regulate erythropoiesis and fetal hemoglobin production in human CD34+ cells. J. Clin. Invest. 118(1): 248-258.
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=18064299
[ PDF ]
A growing community of researchers is using Genpathway products and services
for a range of applications. If you know of other published research involving
Genpathway products, we’d be pleased to include them on our website.
Please send citations to: info@genpathway.com.
FactorPath | ChIP-on-Chip
Tummala P, Mali RS, Guzman E, Zhang X, Mitton KP (2010). Temporal ChIP-on-Chip of RNA-Polymerase-II to detect novel gene activation events during photoreceptor maturation. Mol Vis 16:252-271. http://www.molvis.org/molvis/v16/a32
[ PDF ]
Stayrook KR, Rogers PM, Savkur RS, Wang Y, Su C, Varga G, Bu X, ei T, Nagpal S, Liu XS, Burris TP (2008). Regulation of human 3α-hydroxysteroid dehydrogenase (AKR1C4) expression by the liver X receptor α. Mol Pharm 73:607-612.
http://molpharm.aspetjournals.org/cgi/content/abstract/73/2/607
[ PDF ]
MethylPath MeDNA IP-on-Chip
Morahan JM, YU B, Trent RJ, Pamphlett R (2008). A genome-wide analysis of brain DNA methylation identifies new candidate genes for sporadic amyotrophic lateral sclerosis. Informa healthcare 1-16, iFirst article
http://www.informaworld.com/smpp/content~content=a907381929~db=all~order=pubdate
[ PDF ]
FactorPath | ChIP-Seq
Stahl HF, Fauti T, Ullrich N, Bopp T, Kubach J, et al. (2009). miR-155 Inhibition Sensitizes CD4+ Th Cells for TREG Mediated Suppression. PLoS ONE 4(9): e7158. doi:10.1371/journal.pone.0007158
[ PDF ]
Hariparsad N, Chu X, Yabut J, Labhart P, Hartley DP, Dai X, Evers R (2009). Identification of pregnane-X receptor target genes and coactivator and corepressor binding to promoter elements in human hepatocytes. NAR, 1–14.
http://nar.oxfordjournals.org/cgi/content/full/gkn1047v1
[ PDF ]
Rosenbluth JM, Mays DJ, Pino MF, Tang LJ, Pietenpol JA (2008). A gene signature-based approach Identifies mTOR as a regulator of p73. Mol Cell Biol 28(19): 5951-5964.
http://mcb.asm.org/cgi/content/full/28/19/5951?view=long&pmid=18678646
[ PDF ]
Brynczka C, Labhart P, Merrick BA (2007). NGF-mediated transcriptional targets of p53 in PC12 neuronal differentiation. BMC Genomics 8:139.
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=17540029
[ PDF ]
Agoulnik IU, Vaid A, Nakka M, Alvarado M, Bingman WE, Erdem H, Frolov A, Smith CL, Ayala GE, Ittman MM, Weigel NL (2006). Androgens modulate expression of transcription intermediary factor 2, an androgen receptor coactivator whose expression level correlates with early biochemical recurrence in prostate cancer. Cancer Res 66(21): 10594-10602.
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17079484
[ PDF ]
Labhart P, Karmakar S, Salicru EM, Egan BS, Alexiadis V, O’Malley BW, Smith CL (2005). Identification of target genes in breast cancer cells directly regulated by SRC-3/AIB1 coactivator. Proc Natl Acad Sci USA 102(5): 1339-1334.
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=15677324
[ PDF ]
FactorPath | Query-qPCR
Chisamore MJ, Cunningham ME, Flores O, Wilkinson HA, Chen JD (2009). Characterization of a Novel Small Molecule Subtype Specific Estrogen-Related Receptor a Antagonist in MCF-7 Breast Cancer Cells. PLoS ONE 4(5): e5624. doi:10.1371/journal.pone.0005624
[ PDF ]
Li H, Ray G, Yoo BH, Erdogan M, Rosen KV (2009). Down-regulation of death-associated protein kinase-2 Is required for β-catenin-induced anoikis resistance of malignant epithelial cells.
J. Biol. Chem 284(4): 2012-2022.
http://www.jbc.org/cgi/content/full/284/4/2012
[ PDF ]
Krueger KC, Deneris ES (2008). Serotonergic transcription of human FEV reveals direct GATA factor interactions and fate of Pet-1 deficient serotonin neuron precursors. J Neurosci. 28(48): 12748–12758.
http://www.jneurosci.org/cgi/content/full/28/48/12748
Krueger J Neurosci Nov08.pdf
[ PDF ]
Saban R, Simpson C, Davis C, Dozmorov I, Maier J, Fowler B, Ihnat M, Hurst R, Wershil B, Saban M (2007). Transcription factor network downstream of protease activated receptors (PARs) modulating mouse bladder inflammation. BCM Immunol 8:17.
http://www.biomedcentral.com/1471-2172/8/17
[ PDF ]
TranscriptionPath | Query-qPCR
Alexiadis V, Ballestas ME, Sanchez C, Winokur S, Vedanarayanan V, Warren M, Ehrlich M (2007). RNAPol-ChIP analysis of transcription from FSHD-linked tandem repeats and satellite DNA. Biochim Biophys Acta 1769(1): 29-40.
http://dx.doi.org/10.1016/j.bbaexp.2006.11.006
[ PDF ]
Ferguson GD, Jensen-Pergakes K, Wilkey C, Jhaveri U, Richard N, Verhelle D, De Parseval LM, Corral LG, Xie W, Morris CL, Brady H, Chan K (2007). Immunomodulatory drug CC-4047 is a cell-type and stimulus-selective transcriptional inhibitor of cyclooxygenase 2. J Clin Immunol 27(2): 210-220.
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17308870
[ PDF ]
Saban R, D’Andrea MR, Andrade-Gordon P, Derian CK, Dozmorov I, Ihnat MA, Hurst RE, Simpson C, Saban MR (2007). Regulatory network of inflammation downstream of proteinase-activated receptors. BMC Physiol 7(1): 3.
http://www.biomedcentral.com/1472-6793/7/3/abstract
[ PDF ]
Saban MR, Simpson C, Davis C, Wallis G, Knowlton N, Frank MB, Centola M, Gallucci RM, Saban R (2007). Discriminators of mouse bladder response to intravesical Bacillus Calmette-Guerin (BCG). BMC Immunol 8:6.
http://www.biomedcentral.com/1471-2172/8/6
[ PDF ]
Saban MR, O’Donnell MA, Hurst RE, Wu X, Simpson C, Dozmorov I, Davis CA, Saban R (2008). Molecular networks discriminating mouse bladder responses to intravesical bacillus Calmette-Guerin (BCG), LPS, and TNF-alpha. BCM Immunol 9:4.
http://www.biomedcentral.com/1471-2172/9/4
[ PDF ]
Saban MR, Hellmich HL, Simpson C, Davis CA, Lang ML, Ihnat MA, O'Donnell MA, Wu X-R, Saban R (2007). Repeated BCG treatment of mouse bladder selectively stimulates small GTPases and HLA antigens and inhibits single-spanning uroplakins. BMC Cancer 7(204).
http://www.biomedcentral.com/1471-2407/7/204
[ PDF ]
Saban MR, Backer JM, Backer MV, Maier J, Fowler B, Davis CA, Simpson C, Xue-Ru Wu, Birder L, Freeman MR, Soker S, Hurst RE, Saban R (2007) VEGF receptors and neuropilins are expressed in the urothelial and neuronal cells in normal mouse urinary bladder and are upregulated in inflammation. Am J Physiol Renal Physiol 295: F60 –F72.
http://ajprenal.physiology.org/cgi/content/full/295/1/F60
[ PDF ]
FactorPath & TranscriptionPath | Query-qPCR
Mali RS, Peng GH, Zhang X, Dang L, Chen S, Mitton KP (2008). FIZ1 is part of the regulatory protein complex on active photoreceptor-specific gene promoters in vivo. BMC Mol, 9(87): 1471-2199.
http://www.biomedcentral.com/1471-2199/9/87
[ PDF ]
HistonePath & TranscriptionPath | Query-qPCR
deParseval LM, Verhelle D, Glezer E, Jensen-Pergakes K, Ferguson GD, Corral LG, Morris CL, Muller G, Brady H, Chan K (2008). Pomalidomide and lenalidomide regulate erythropoiesis and fetal hemoglobin production in human CD34+ cells. J. Clin. Invest. 118(1): 248-258.
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=18064299
[ PDF ]
© 2010 Genpathway, Inc.
Chromatin and Methylated DNA Immunoprecipitation
"ChIP" Products & Services
"ChIP" Products & Services
